PDB Entry (5rfz) |
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PDB ID: 5rfz | Resolution: 1.68 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33028810 | DOI: 10.1038/s41467-020-18709-w | |
Protein |
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Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: PCM-0102274 | ||
Canonical SMILES: ClCC(=O)Nc1cccnc1Cl | ||
Standard InChI: InChI=1S/C7H6Cl2N2O/c8-4-6(12)11-5-2-1-3-10-7(5)9/h1-3H,4H2,(H,11,12) | ||
HET Code: T8V | PubChem: 737317 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C7H6Cl2N2O | Mol. Weight: 203.98572 | logP: 1.9123 |
HBD: 1 | HBA: 2 | |
#Rotatable Bonds: 2 | TPSA: 41.99 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 145 | A | 19.48 | 13.31 | Halomethyl Carbonyl |
Binding Affinity |
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