PDB Entry (5rfz)
PDB ID: 5rfz Resolution: 1.68 Å Exp. Method: X-RAY DIFFRACTION
PMID: 33028810 DOI: 10.1038/s41467-020-18709-w
Protein
Protein Name: Replicase polyprotein 1ab
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2)
Gene Symbol: rep Gene ID: 43740578
Protein Class: HYDROLASE
Ligand
Ligand Name:   PCM-0102274
Canonical SMILES:   ClCC(=O)Nc1cccnc1Cl
Standard InChI:   InChI=1S/C7H6Cl2N2O/c8-4-6(12)11-5-2-1-3-10-7(5)9/h1-3H,4H2,(H,11,12)
HET Code:   T8V PubChem:   737317
DrugBank:   - ChEMBL:   -
Molecular Formula:   C7H6Cl2N2O Mol. Weight:   203.98572 logP:   1.9123
HBD:   1 HBA:   2
#Rotatable Bonds:   2 TPSA:   41.99
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution CYS 145 A 19.48 13.31 Halomethyl Carbonyl
Binding Affinity
-