PDB Entry (5rfy)
PDB ID: 5rfy Resolution: 1.9 Å Exp. Method: X-RAY DIFFRACTION
PMID: 33028810 DOI: 10.1038/s41467-020-18709-w
Protein
Protein Name: Replicase polyprotein 1ab
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2)
Gene Symbol: rep Gene ID: 43740578
Protein Class: HYDROLASE
Ligand
Ligand Name:   PCM-0102974
Canonical SMILES:   CC(C)N(C)C(=O)C1CCN(CC1)C(=O)CCl
Standard InChI:   InChI=1S/C12H21ClN2O2/c1-9(2)14(3)12(17)10-4-6-15(7-5-10)11(16)8-13/h9-10H,4-8H2,1-3H3
HET Code:   T8S PubChem:   52908108
DrugBank:   - ChEMBL:   -
Molecular Formula:   C12H21ClN2O2 Mol. Weight:   260.12915 logP:   1.3306
HBD:   0 HBA:   2
#Rotatable Bonds:   3 TPSA:   40.62
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution CYS 145 A 23.17 13.78 Halomethyl Carbonyl
Binding Affinity
-