PDB Entry (5rfy) |
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PDB ID: 5rfy | Resolution: 1.9 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33028810 | DOI: 10.1038/s41467-020-18709-w | |
Protein |
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Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: PCM-0102974 | ||
Canonical SMILES: CC(C)N(C)C(=O)C1CCN(CC1)C(=O)CCl | ||
Standard InChI: InChI=1S/C12H21ClN2O2/c1-9(2)14(3)12(17)10-4-6-15(7-5-10)11(16)8-13/h9-10H,4-8H2,1-3H3 | ||
HET Code: T8S | PubChem: 52908108 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C12H21ClN2O2 | Mol. Weight: 260.12915 | logP: 1.3306 |
HBD: 0 | HBA: 2 | |
#Rotatable Bonds: 3 | TPSA: 40.62 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 145 | A | 23.17 | 13.78 | Halomethyl Carbonyl |
Binding Affinity |
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