PDB Entry (5rfx)
PDB ID: 5rfx Resolution: 1.55 Å Exp. Method: X-RAY DIFFRACTION
PMID: 33028810 DOI: 10.1038/s41467-020-18709-w
Protein
Protein Name: Replicase polyprotein 1ab
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2)
Gene Symbol: rep Gene ID: 43740578
Protein Class: HYDROLASE
Ligand
Ligand Name:   PCM-0102254
Canonical SMILES:   COc1ccc(cc1)N2CCN(CC2)C(=O)CCl
Standard InChI:   InChI=1S/C13H17ClN2O2/c1-18-12-4-2-11(3-5-12)15-6-8-16(9-7-15)13(17)10-14/h2-5H,6-10H2,1H3
HET Code:   T8P PubChem:   2497546
DrugBank:   - ChEMBL:   -
Molecular Formula:   C13H17ClN2O2 Mol. Weight:   268.09787 logP:   1.5826
HBD:   0 HBA:   3
#Rotatable Bonds:   3 TPSA:   32.78
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution CYS 145 A 24.43 13.75 Halomethyl Carbonyl
Binding Affinity
-