PDB Entry (5rfx) |
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PDB ID: 5rfx | Resolution: 1.55 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33028810 | DOI: 10.1038/s41467-020-18709-w | |
Protein |
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Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: PCM-0102254 | ||
Canonical SMILES: COc1ccc(cc1)N2CCN(CC2)C(=O)CCl | ||
Standard InChI: InChI=1S/C13H17ClN2O2/c1-18-12-4-2-11(3-5-12)15-6-8-16(9-7-15)13(17)10-14/h2-5H,6-10H2,1H3 | ||
HET Code: T8P | PubChem: 2497546 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C13H17ClN2O2 | Mol. Weight: 268.09787 | logP: 1.5826 |
HBD: 0 | HBA: 3 | |
#Rotatable Bonds: 3 | TPSA: 32.78 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 145 | A | 24.43 | 13.75 | Halomethyl Carbonyl |
Binding Affinity |
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