PDB Entry (5rfv)
PDB ID: 5rfv Resolution: 1.48 Å Exp. Method: X-RAY DIFFRACTION
PMID: 33028810 DOI: 10.1038/s41467-020-18709-w
Protein
Protein Name: Replicase polyprotein 1ab
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2)
Gene Symbol: rep Gene ID: 43740578
Protein Class: HYDROLASE
Ligand
Ligand Name:   PCM-0102306
Canonical SMILES:   ClCC(=O)N1CCN(CC1)C(=O)c2cccs2
Standard InChI:   InChI=1S/C11H13ClN2O2S/c12-8-10(15)13-3-5-14(6-4-13)11(16)9-2-1-7-17-9/h1-2,7H,3-6,8H2
HET Code:   T8J PubChem:   2560621
DrugBank:   - ChEMBL:   -
Molecular Formula:   C11H13ClN2O2S Mol. Weight:   272.03864 logP:   1.2713
HBD:   0 HBA:   3
#Rotatable Bonds:   2 TPSA:   40.62
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution CYS 145 A 22.86 13.84 Halomethyl Carbonyl
Binding Affinity
-