PDB Entry (5e1g)
PDB ID: 5e1g Resolution: 1.85 Å Exp. Method: X-RAY DIFFRACTION
PMID: 27820797 DOI: 10.1038/nchembio.2237
Protein
Protein Name: L,D-transpeptidase 2
Uniprot ID/ACC: I6Y9J2 (LDT2_MYCTU) Organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Gene Symbol: ldtB Gene ID: 888160
Protein Class: TRANSFERASE
Ligand
Ligand Name:   carbapenem T208
Canonical SMILES:   C[C@@H](O)[C@@H]1[C@H]2[C@@H](C)C(SCC(=O)OC3CCCCC3)=C(N2C1=O)C(O)=O
Standard InChI:   InChI=1S/C18H25NO6S/c1-9-14-13(10(2)20)17(22)19(14)15(18(23)24)16(9)26-8-12(21)25-11-6-4-3-5-7-11/h9-11,13-14,20H,3-8H2,1-2H3,(H,23,24)/t9-,10-,13-,14-/m1/s1
HET Code:   T8G PubChem:   122174214
DrugBank:   - ChEMBL:   -
Molecular Formula:   C18H25NO6S Mol. Weight:   383.14026 logP:   1.7492
HBD:   2 HBA:   6
#Rotatable Bonds:   6 TPSA:   104.14
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Beta-Lactam Addition CYS 354 A 21.24 13.13 Beta-Lactam
Binding Affinity
-