PDB Entry (5rfu) |
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PDB ID: 5rfu | Resolution: 1.53 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33028810 | DOI: 10.1038/s41467-020-18709-w | |
Protein |
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Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: PCM-0102121 | ||
Canonical SMILES: ClCC(=O)N1CCN(CC1)S(=O)(=O)c2ccc(Cl)s2 | ||
Standard InChI: InChI=1S/C10H12Cl2N2O3S2/c11-7-9(15)13-3-5-14(6-4-13)19(16,17)10-2-1-8(12)18-10/h1-2H,3-7H2 | ||
HET Code: T8D | PubChem: 9449842 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C10H12Cl2N2O3S2 | Mol. Weight: 341.96664 | logP: 1.4732 |
HBD: 0 | HBA: 4 | |
#Rotatable Bonds: 3 | TPSA: 57.69 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 145 | A | 22.91 | 12.76 | Halomethyl Carbonyl |
Binding Affinity |
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