PDB Entry (5rft)
PDB ID: 5rft Resolution: 1.58 Å Exp. Method: X-RAY DIFFRACTION
PMID: 33028810 DOI: 10.1038/s41467-020-18709-w
Protein
Protein Name: Replicase polyprotein 1ab
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2)
Gene Symbol: rep Gene ID: 43740578
Protein Class: HYDROLASE
Ligand
Ligand Name:   PCM-0102432
Canonical SMILES:   c1cccc(c12)[C@@H](CN(C2)C(=O)CCl)c3ccccc3
Standard InChI:   InChI=1S/C17H16ClNO/c18-10-17(20)19-11-14-8-4-5-9-15(14)16(12-19)13-6-2-1-3-7-13/h1-9,16H,10-12H2/t16-/m0/s1
HET Code:   T8A PubChem:   96582197
DrugBank:   - ChEMBL:   -
Molecular Formula:   C17H16ClNO Mol. Weight:   285.09204 logP:   3.3995
HBD:   0 HBA:   1
#Rotatable Bonds:   2 TPSA:   20.31
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution CYS 145 A 22.41 14.38 Halomethyl Carbonyl
Binding Affinity
-