PDB Entry (5rft) |
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PDB ID: 5rft | Resolution: 1.58 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33028810 | DOI: 10.1038/s41467-020-18709-w | |
Protein |
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Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: PCM-0102432 | ||
Canonical SMILES: c1cccc(c12)[C@@H](CN(C2)C(=O)CCl)c3ccccc3 | ||
Standard InChI: InChI=1S/C17H16ClNO/c18-10-17(20)19-11-14-8-4-5-9-15(14)16(12-19)13-6-2-1-3-7-13/h1-9,16H,10-12H2/t16-/m0/s1 | ||
HET Code: T8A | PubChem: 96582197 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C17H16ClNO | Mol. Weight: 285.09204 | logP: 3.3995 |
HBD: 0 | HBA: 1 | |
#Rotatable Bonds: 2 | TPSA: 20.31 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 145 | A | 22.41 | 14.38 | Halomethyl Carbonyl |
Binding Affinity |
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