PDB Entry (5rfs)
PDB ID: 5rfs Resolution: 1.7 Å Exp. Method: X-RAY DIFFRACTION
PMID: 33028810 DOI: 10.1038/s41467-020-18709-w
Protein
Protein Name: Replicase polyprotein 1ab
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2)
Gene Symbol: rep Gene ID: 43740578
Protein Class: HYDROLASE
Ligand
Ligand Name:   PCM-0102739
Canonical SMILES:   ClCC(=O)N1CCN(Cc2ccsc2)CC1
Standard InChI:   InChI=1S/C11H15ClN2OS/c12-7-11(15)14-4-2-13(3-5-14)8-10-1-6-16-9-10/h1,6,9H,2-5,7-8H2
HET Code:   T84 PubChem:   50988459
DrugBank:   - ChEMBL:   -
Molecular Formula:   C11H15ClN2OS Mol. Weight:   258.05936 logP:   1.6311
HBD:   0 HBA:   3
#Rotatable Bonds:   3 TPSA:   23.55
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution CYS 145 A 20.67 13.01 Halomethyl Carbonyl
Binding Affinity
-