PDB Entry (5rfs) |
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PDB ID: 5rfs | Resolution: 1.7 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33028810 | DOI: 10.1038/s41467-020-18709-w | |
Protein |
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Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: PCM-0102739 | ||
Canonical SMILES: ClCC(=O)N1CCN(Cc2ccsc2)CC1 | ||
Standard InChI: InChI=1S/C11H15ClN2OS/c12-7-11(15)14-4-2-13(3-5-14)8-10-1-6-16-9-10/h1,6,9H,2-5,7-8H2 | ||
HET Code: T84 | PubChem: 50988459 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C11H15ClN2OS | Mol. Weight: 258.05936 | logP: 1.6311 |
HBD: 0 | HBA: 3 | |
#Rotatable Bonds: 3 | TPSA: 23.55 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 145 | A | 20.67 | 13.01 | Halomethyl Carbonyl |
Binding Affinity |
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