PDB Entry (5rfq)
PDB ID: 5rfq Resolution: 1.76 Å Exp. Method: X-RAY DIFFRACTION
PMID: 33028810 DOI: 10.1038/s41467-020-18709-w
Protein
Protein Name: Replicase polyprotein 1ab
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2)
Gene Symbol: rep Gene ID: 43740578
Protein Class: HYDROLASE
Ligand
Ligand Name:   PCM-0102179
Canonical SMILES:   ClCC(=O)Nc1cccc(c1)N2CCCC2=O
Standard InChI:   InChI=1S/C12H13ClN2O2/c13-8-11(16)14-9-3-1-4-10(7-9)15-6-2-5-12(15)17/h1,3-4,7H,2,5-6,8H2,(H,14,16)
HET Code:   T7Y PubChem:   16227181
DrugBank:   - ChEMBL:   -
Molecular Formula:   C12H13ClN2O2 Mol. Weight:   252.06656 logP:   1.9907
HBD:   1 HBA:   2
#Rotatable Bonds:   3 TPSA:   49.41
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution CYS 145 A 21.88 13.35 Halomethyl Carbonyl
Binding Affinity
-