PDB Entry (5rfq) |
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PDB ID: 5rfq | Resolution: 1.76 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33028810 | DOI: 10.1038/s41467-020-18709-w | |
Protein |
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Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: PCM-0102179 | ||
Canonical SMILES: ClCC(=O)Nc1cccc(c1)N2CCCC2=O | ||
Standard InChI: InChI=1S/C12H13ClN2O2/c13-8-11(16)14-9-3-1-4-10(7-9)15-6-2-5-12(15)17/h1,3-4,7H,2,5-6,8H2,(H,14,16) | ||
HET Code: T7Y | PubChem: 16227181 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C12H13ClN2O2 | Mol. Weight: 252.06656 | logP: 1.9907 |
HBD: 1 | HBA: 2 | |
#Rotatable Bonds: 3 | TPSA: 49.41 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 145 | A | 21.88 | 13.35 | Halomethyl Carbonyl |
Binding Affinity |
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