PDB Entry (5rfp)
PDB ID: 5rfp Resolution: 2.03 Å Exp. Method: X-RAY DIFFRACTION
PMID: 33028810 DOI: 10.1038/s41467-020-18709-w
Protein
Protein Name: Replicase polyprotein 1ab
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2)
Gene Symbol: rep Gene ID: 43740578
Protein Class: HYDROLASE
Ligand
Ligand Name:   PCM-0102190
Canonical SMILES:   ClCC(=O)N[C@H](C)c1cccc(Cl)c1
Standard InChI:   InChI=1S/C10H11Cl2NO/c1-7(13-10(14)6-11)8-3-2-4-9(12)5-8/h2-5,7H,6H2,1H3,(H,13,14)/t7-/m1/s1
HET Code:   T7V PubChem:   7063653
DrugBank:   - ChEMBL:   -
Molecular Formula:   C10H11Cl2NO Mol. Weight:   231.02177 logP:   2.756
HBD:   1 HBA:   1
#Rotatable Bonds:   3 TPSA:   29.1
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution CYS 145 A 25.23 12.33 Halomethyl Carbonyl
Binding Affinity
-