PDB Entry (5rfp) |
||
| ||
PDB ID: 5rfp | Resolution: 2.03 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33028810 | DOI: 10.1038/s41467-020-18709-w | |
Protein |
|
Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
||
Ligand Name: PCM-0102190 | ||
Canonical SMILES: ClCC(=O)N[C@H](C)c1cccc(Cl)c1 | ||
Standard InChI: InChI=1S/C10H11Cl2NO/c1-7(13-10(14)6-11)8-3-2-4-9(12)5-8/h2-5,7H,6H2,1H3,(H,13,14)/t7-/m1/s1 | ||
HET Code: T7V | PubChem: 7063653 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C10H11Cl2NO | Mol. Weight: 231.02177 | logP: 2.756 |
HBD: 1 | HBA: 1 | |
#Rotatable Bonds: 3 | TPSA: 29.1 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 145 | A | 25.23 | 12.33 | Halomethyl Carbonyl |
Binding Affinity |
||
- |