PDB Entry (5rfo)
PDB ID: 5rfo Resolution: 1.83 Å Exp. Method: X-RAY DIFFRACTION
PMID: 33028810 DOI: 10.1038/s41467-020-18709-w
Protein
Protein Name: Replicase polyprotein 1ab
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2)
Gene Symbol: rep Gene ID: 43740578
Protein Class: HYDROLASE
Ligand
Ligand Name:   PCM-0102972
Canonical SMILES:   ClCC(=O)N1CCC(CC1)C(=O)N2CCCCC2
Standard InChI:   InChI=1S/C13H21ClN2O2/c14-10-12(17)15-8-4-11(5-9-15)13(18)16-6-2-1-3-7-16/h11H,1-10H2
HET Code:   T7S PubChem:   54592458
DrugBank:   - ChEMBL:   -
Molecular Formula:   C13H21ClN2O2 Mol. Weight:   272.12915 logP:   1.4763
HBD:   0 HBA:   2
#Rotatable Bonds:   2 TPSA:   40.62
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution CYS 145 A 24.49 13.48 Halomethyl Carbonyl
Binding Affinity
-