PDB Entry (5rfo) |
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PDB ID: 5rfo | Resolution: 1.83 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33028810 | DOI: 10.1038/s41467-020-18709-w | |
Protein |
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Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: PCM-0102972 | ||
Canonical SMILES: ClCC(=O)N1CCC(CC1)C(=O)N2CCCCC2 | ||
Standard InChI: InChI=1S/C13H21ClN2O2/c14-10-12(17)15-8-4-11(5-9-15)13(18)16-6-2-1-3-7-16/h11H,1-10H2 | ||
HET Code: T7S | PubChem: 54592458 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C13H21ClN2O2 | Mol. Weight: 272.12915 | logP: 1.4763 |
HBD: 0 | HBA: 2 | |
#Rotatable Bonds: 2 | TPSA: 40.62 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 145 | A | 24.49 | 13.48 | Halomethyl Carbonyl |
Binding Affinity |
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