PDB Entry (5rfn) |
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PDB ID: 5rfn | Resolution: 1.8 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33028810 | DOI: 10.1038/s41467-020-18709-w | |
Protein |
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Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: PCM-0102868 | ||
Canonical SMILES: Fc1ccc(cc1)N(C(=O)CCl)[C@@H](CS2(=O)=O)C=C2 | ||
Standard InChI: InChI=1S/C12H11ClFNO3S/c13-7-12(16)15(10-3-1-9(14)2-4-10)11-5-6-19(17,18)8-11/h1-6,11H,7-8H2/t11-/m1/s1 | ||
HET Code: T7P | PubChem: 42157716 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C12H11ClFNO3S | Mol. Weight: 303.0132 | logP: 1.7082 |
HBD: 0 | HBA: 3 | |
#Rotatable Bonds: 3 | TPSA: 54.45 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 145 | A | 27.07 | 13.33 | Halomethyl Carbonyl |
Binding Affinity |
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