PDB Entry (5rfm) |
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PDB ID: 5rfm | Resolution: 2.06 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33028810 | DOI: 10.1038/s41467-020-18709-w | |
Protein |
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Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: PCM-0102539 | ||
Canonical SMILES: Cc1ccc(cc1)N(C(=O)CCl)[C@@H](CS2(=O)=O)C=C2 | ||
Standard InChI: InChI=1S/C13H14ClNO3S/c1-10-2-4-11(5-3-10)15(13(16)8-14)12-6-7-19(17,18)9-12/h2-7,12H,8-9H2,1H3/t12-/m1/s1 | ||
HET Code: T7J | PubChem: 42157704 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C13H14ClNO3S | Mol. Weight: 299.0383 | logP: 1.87752 |
HBD: 0 | HBA: 3 | |
#Rotatable Bonds: 3 | TPSA: 54.45 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 145 | A | 27.58 | 13.45 | Halomethyl Carbonyl |
Binding Affinity |
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