PDB Entry (5rfl) |
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PDB ID: 5rfl | Resolution: 1.64 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33028810 | DOI: 10.1038/s41467-020-18709-w | |
Protein |
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Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: PCM-0102389 | ||
Canonical SMILES: Oc1ccccc1NC(=O)C2CCN(CC2)C(=O)CCl | ||
Standard InChI: InChI=1S/C14H17ClN2O3/c15-9-13(19)17-7-5-10(6-8-17)14(20)16-11-3-1-2-4-12(11)18/h1-4,10,18H,5-9H2,(H,16,20) | ||
HET Code: T7G | PubChem: 39869608 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C14H17ClN2O3 | Mol. Weight: 296.09277 | logP: 1.8081 |
HBD: 2 | HBA: 3 | |
#Rotatable Bonds: 3 | TPSA: 69.64 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 145 | A | 23.75 | 14.01 | Halomethyl Carbonyl |
Binding Affinity |
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