PDB Entry (5rfl)
PDB ID: 5rfl Resolution: 1.64 Å Exp. Method: X-RAY DIFFRACTION
PMID: 33028810 DOI: 10.1038/s41467-020-18709-w
Protein
Protein Name: Replicase polyprotein 1ab
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2)
Gene Symbol: rep Gene ID: 43740578
Protein Class: HYDROLASE
Ligand
Ligand Name:   PCM-0102389
Canonical SMILES:   Oc1ccccc1NC(=O)C2CCN(CC2)C(=O)CCl
Standard InChI:   InChI=1S/C14H17ClN2O3/c15-9-13(19)17-7-5-10(6-8-17)14(20)16-11-3-1-2-4-12(11)18/h1-4,10,18H,5-9H2,(H,16,20)
HET Code:   T7G PubChem:   39869608
DrugBank:   - ChEMBL:   -
Molecular Formula:   C14H17ClN2O3 Mol. Weight:   296.09277 logP:   1.8081
HBD:   2 HBA:   3
#Rotatable Bonds:   3 TPSA:   69.64
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution CYS 145 A 23.75 14.01 Halomethyl Carbonyl
Binding Affinity
-