PDB Entry (5rfk) |
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PDB ID: 5rfk | Resolution: 1.75 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33028810 | DOI: 10.1038/s41467-020-18709-w | |
Protein |
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Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: PCM-0102575 | ||
Canonical SMILES: ClCC(=O)N1CCC(CC1)NC(=O)c2ccccc2 | ||
Standard InChI: InChI=1S/C14H17ClN2O2/c15-10-13(18)17-8-6-12(7-9-17)16-14(19)11-4-2-1-3-5-11/h1-5,12H,6-10H2,(H,16,19) | ||
HET Code: T7D | PubChem: 54592507 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C14H17ClN2O2 | Mol. Weight: 280.09787 | logP: 1.6462 |
HBD: 1 | HBA: 2 | |
#Rotatable Bonds: 3 | TPSA: 49.41 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 145 | A | 24.78 | 13.43 | Halomethyl Carbonyl |
Binding Affinity |
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