PDB Entry (5rfj)
PDB ID: 5rfj Resolution: 1.8 Å Exp. Method: X-RAY DIFFRACTION
PMID: 33028810 DOI: 10.1038/s41467-020-18709-w
Protein
Protein Name: Replicase polyprotein 1ab
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2)
Gene Symbol: rep Gene ID: 43740578
Protein Class: HYDROLASE
Ligand
Ligand Name:   PCM-0103067
Canonical SMILES:   COc1cccc(c12)sc(n2)NC(=O)CCl
Standard InChI:   InChI=1S/C10H9ClN2O2S/c1-15-6-3-2-4-7-9(6)13-10(16-7)12-8(14)5-11/h2-4H,5H2,1H3,(H,12,13,14)
HET Code:   T7A PubChem:   12364581
DrugBank:   - ChEMBL:   -
Molecular Formula:   C10H9ClN2O2S Mol. Weight:   256.00732 logP:   2.4822
HBD:   1 HBA:   4
#Rotatable Bonds:   3 TPSA:   51.22
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution CYS 145 A 21.02 13.78 Halomethyl Carbonyl
Binding Affinity
-