PDB Entry (5rfj) |
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PDB ID: 5rfj | Resolution: 1.8 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33028810 | DOI: 10.1038/s41467-020-18709-w | |
Protein |
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Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: PCM-0103067 | ||
Canonical SMILES: COc1cccc(c12)sc(n2)NC(=O)CCl | ||
Standard InChI: InChI=1S/C10H9ClN2O2S/c1-15-6-3-2-4-7-9(6)13-10(16-7)12-8(14)5-11/h2-4H,5H2,1H3,(H,12,13,14) | ||
HET Code: T7A | PubChem: 12364581 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C10H9ClN2O2S | Mol. Weight: 256.00732 | logP: 2.4822 |
HBD: 1 | HBA: 4 | |
#Rotatable Bonds: 3 | TPSA: 51.22 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 145 | A | 21.02 | 13.78 | Halomethyl Carbonyl |
Binding Affinity |
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