PDB Entry (5rfh) |
||
| ||
PDB ID: 5rfh | Resolution: 1.58 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33028810 | DOI: 10.1038/s41467-020-18709-w | |
Protein |
|
Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
||
Ligand Name: PCM-0102277 | ||
Canonical SMILES: ClCC(=O)N1CCN(Cc2ccc(Cl)s2)CC1 | ||
Standard InChI: InChI=1S/C11H14Cl2N2OS/c12-7-11(16)15-5-3-14(4-6-15)8-9-1-2-10(13)17-9/h1-2H,3-8H2 | ||
HET Code: T6Y | PubChem: 9391886 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C11H14Cl2N2OS | Mol. Weight: 292.0204 | logP: 2.2845 |
HBD: 0 | HBA: 3 | |
#Rotatable Bonds: 3 | TPSA: 23.55 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 145 | A | 23.88 | 13.01 | Halomethyl Carbonyl |
Binding Affinity |
||
- |