PDB Entry (5rfg) |
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PDB ID: 5rfg | Resolution: 2.32 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33028810 | DOI: 10.1038/s41467-020-18709-w | |
Protein |
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Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: PCM-0102372 | ||
Canonical SMILES: O=S1(=O)C[C@H](C=C1)N(C(=O)CCl)c2ccccc2 | ||
Standard InChI: InChI=1S/C12H12ClNO3S/c13-8-12(15)14(10-4-2-1-3-5-10)11-6-7-18(16,17)9-11/h1-7,11H,8-9H2/t11-/m0/s1 | ||
HET Code: T6V | PubChem: 2002581 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C12H12ClNO3S | Mol. Weight: 285.02264 | logP: 1.5691 |
HBD: 0 | HBA: 3 | |
#Rotatable Bonds: 3 | TPSA: 54.45 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 145 | A | 23.54 | 13.5 | Halomethyl Carbonyl |
Binding Affinity |
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