PDB Entry (5rfg)
PDB ID: 5rfg Resolution: 2.32 Å Exp. Method: X-RAY DIFFRACTION
PMID: 33028810 DOI: 10.1038/s41467-020-18709-w
Protein
Protein Name: Replicase polyprotein 1ab
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2)
Gene Symbol: rep Gene ID: 43740578
Protein Class: HYDROLASE
Ligand
Ligand Name:   PCM-0102372
Canonical SMILES:   O=S1(=O)C[C@H](C=C1)N(C(=O)CCl)c2ccccc2
Standard InChI:   InChI=1S/C12H12ClNO3S/c13-8-12(15)14(10-4-2-1-3-5-10)11-6-7-18(16,17)9-11/h1-7,11H,8-9H2/t11-/m0/s1
HET Code:   T6V PubChem:   2002581
DrugBank:   - ChEMBL:   -
Molecular Formula:   C12H12ClNO3S Mol. Weight:   285.02264 logP:   1.5691
HBD:   0 HBA:   3
#Rotatable Bonds:   3 TPSA:   54.45
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution CYS 145 A 23.54 13.5 Halomethyl Carbonyl
Binding Affinity
-