PDB Entry (5rey) |
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PDB ID: 5rey | Resolution: 1.96 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33028810 | DOI: 10.1038/s41467-020-18709-w | |
Protein |
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Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: PCM-0102911 | ||
Canonical SMILES: Cc1ccccc1CN1CCCN(CC1)C(=O)CCl | ||
Standard InChI: InChI=1S/C15H21ClN2O/c1-13-5-2-3-6-14(13)12-17-7-4-8-18(10-9-17)15(19)11-16/h2-3,5-6H,4,7-12H2,1H3 | ||
HET Code: T4Y | PubChem: 50988137 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C15H21ClN2O | Mol. Weight: 280.13425 | logP: 2.26812 |
HBD: 0 | HBA: 2 | |
#Rotatable Bonds: 3 | TPSA: 23.55 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 145 | A | 22.87 | 13.15 | Halomethyl Carbonyl |
Binding Affinity |
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