PDB Entry (5rey)
PDB ID: 5rey Resolution: 1.96 Å Exp. Method: X-RAY DIFFRACTION
PMID: 33028810 DOI: 10.1038/s41467-020-18709-w
Protein
Protein Name: Replicase polyprotein 1ab
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2)
Gene Symbol: rep Gene ID: 43740578
Protein Class: HYDROLASE
Ligand
Ligand Name:   PCM-0102911
Canonical SMILES:   Cc1ccccc1CN1CCCN(CC1)C(=O)CCl
Standard InChI:   InChI=1S/C15H21ClN2O/c1-13-5-2-3-6-14(13)12-17-7-4-8-18(10-9-17)15(19)11-16/h2-3,5-6H,4,7-12H2,1H3
HET Code:   T4Y PubChem:   50988137
DrugBank:   - ChEMBL:   -
Molecular Formula:   C15H21ClN2O Mol. Weight:   280.13425 logP:   2.26812
HBD:   0 HBA:   2
#Rotatable Bonds:   3 TPSA:   23.55
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution CYS 145 A 22.87 13.15 Halomethyl Carbonyl
Binding Affinity
-