PDB Entry (5rex) |
||
| ||
PDB ID: 5rex | Resolution: 2.07 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33028810 | DOI: 10.1038/s41467-020-18709-w | |
Protein |
|
Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
||
Ligand Name: PCM-0102287 | ||
Canonical SMILES: ClCC(=O)N1CCN(CC1)Cc2cccc(c23)cccc3 | ||
Standard InChI: InChI=1S/C17H19ClN2O/c18-12-17(21)20-10-8-19(9-11-20)13-15-6-3-5-14-4-1-2-7-16(14)15/h1-7H,8-13H2 | ||
HET Code: T4V | PubChem: 9327085 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C17H19ClN2O | Mol. Weight: 302.1186 | logP: 2.7228 |
HBD: 0 | HBA: 2 | |
#Rotatable Bonds: 3 | TPSA: 23.55 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 145 | A | 16.77 | 12.31 | Halomethyl Carbonyl |
Binding Affinity |
||
- |