PDB Entry (5rev) |
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PDB ID: 5rev | Resolution: 1.6 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33028810 | DOI: 10.1038/s41467-020-18709-w | |
Protein |
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Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: PCM-0103072 | ||
Canonical SMILES: ClCC(=O)Nc1cccc(c1)C(=O)N2CCSCC2 | ||
Standard InChI: InChI=1S/C13H15ClN2O2S/c14-9-12(17)15-11-3-1-2-10(8-11)13(18)16-4-6-19-7-5-16/h1-3,8H,4-7,9H2,(H,15,17) | ||
HET Code: T4J | PubChem: 47002695 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C13H15ClN2O2S | Mol. Weight: 298.0543 | logP: 2.0529 |
HBD: 1 | HBA: 3 | |
#Rotatable Bonds: 3 | TPSA: 49.41 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 145 | A | 26.08 | 12.95 | Halomethyl Carbonyl |
Binding Affinity |
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