PDB Entry (5rev)
PDB ID: 5rev Resolution: 1.6 Å Exp. Method: X-RAY DIFFRACTION
PMID: 33028810 DOI: 10.1038/s41467-020-18709-w
Protein
Protein Name: Replicase polyprotein 1ab
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2)
Gene Symbol: rep Gene ID: 43740578
Protein Class: HYDROLASE
Ligand
Ligand Name:   PCM-0103072
Canonical SMILES:   ClCC(=O)Nc1cccc(c1)C(=O)N2CCSCC2
Standard InChI:   InChI=1S/C13H15ClN2O2S/c14-9-12(17)15-11-3-1-2-10(8-11)13(18)16-4-6-19-7-5-16/h1-3,8H,4-7,9H2,(H,15,17)
HET Code:   T4J PubChem:   47002695
DrugBank:   - ChEMBL:   -
Molecular Formula:   C13H15ClN2O2S Mol. Weight:   298.0543 logP:   2.0529
HBD:   1 HBA:   3
#Rotatable Bonds:   3 TPSA:   49.41
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution CYS 145 A 26.08 12.95 Halomethyl Carbonyl
Binding Affinity
-