PDB Entry (5reu) |
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PDB ID: 5reu | Resolution: 1.69 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33028810 | DOI: 10.1038/s41467-020-18709-w | |
Protein |
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Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: PCM-0102395 | ||
Canonical SMILES: ClCC(=O)N1CCN(CC1)S(=O)(=O)c2ccccc2C#N | ||
Standard InChI: InChI=1S/C13H14ClN3O3S/c14-9-13(18)16-5-7-17(8-6-16)21(19,20)12-4-2-1-3-11(12)10-15/h1-4H,5-9H2 | ||
HET Code: T4D | PubChem: 9115298 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C13H14ClN3O3S | Mol. Weight: 327.04443 | logP: 0.62998 |
HBD: 0 | HBA: 4 | |
#Rotatable Bonds: 3 | TPSA: 81.48 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 145 | A | 23.5 | 13.31 | Halomethyl Carbonyl |
Binding Affinity |
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