PDB Entry (5ret) |
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PDB ID: 5ret | Resolution: 1.68 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33028810 | DOI: 10.1038/s41467-020-18709-w | |
Protein |
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Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: PCM-0102269 | ||
Canonical SMILES: ClCC(=O)N1CCN(Cc2cccc(Cl)c2)CC1 | ||
Standard InChI: InChI=1S/C13H16Cl2N2O/c14-9-13(18)17-6-4-16(5-7-17)10-11-2-1-3-12(15)8-11/h1-3,8H,4-7,9-10H2 | ||
HET Code: T47 | PubChem: 16226890 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C13H16Cl2N2O | Mol. Weight: 286.06396 | logP: 2.223 |
HBD: 0 | HBA: 2 | |
#Rotatable Bonds: 3 | TPSA: 23.55 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 145 | A | 22.97 | 12.16 | Halomethyl Carbonyl |
Binding Affinity |
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