PDB Entry (5ret)
PDB ID: 5ret Resolution: 1.68 Å Exp. Method: X-RAY DIFFRACTION
PMID: 33028810 DOI: 10.1038/s41467-020-18709-w
Protein
Protein Name: Replicase polyprotein 1ab
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2)
Gene Symbol: rep Gene ID: 43740578
Protein Class: HYDROLASE
Ligand
Ligand Name:   PCM-0102269
Canonical SMILES:   ClCC(=O)N1CCN(Cc2cccc(Cl)c2)CC1
Standard InChI:   InChI=1S/C13H16Cl2N2O/c14-9-13(18)17-6-4-16(5-7-17)10-11-2-1-3-12(15)8-11/h1-3,8H,4-7,9-10H2
HET Code:   T47 PubChem:   16226890
DrugBank:   - ChEMBL:   -
Molecular Formula:   C13H16Cl2N2O Mol. Weight:   286.06396 logP:   2.223
HBD:   0 HBA:   2
#Rotatable Bonds:   3 TPSA:   23.55
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution CYS 145 A 22.97 12.16 Halomethyl Carbonyl
Binding Affinity
-