PDB Entry (5rer) |
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PDB ID: 5rer | Resolution: 1.88 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33028810 | DOI: 10.1038/s41467-020-18709-w | |
Protein |
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Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: PCM-0102615 | ||
Canonical SMILES: Fc1ccc(cc1)[C@H]2CN(CCO2)C(=O)CCl | ||
Standard InChI: InChI=1S/C12H13ClFNO2/c13-7-12(16)15-5-6-17-11(8-15)9-1-3-10(14)4-2-9/h1-4,11H,5-8H2/t11-/m1/s1 | ||
HET Code: T3J | PubChem: 51889847 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C12H13ClFNO2 | Mol. Weight: 257.0619 | logP: 1.9644 |
HBD: 0 | HBA: 2 | |
#Rotatable Bonds: 2 | TPSA: 29.54 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 145 | A | 22.69 | 14.14 | Halomethyl Carbonyl |
Binding Affinity |
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