PDB Entry (5rer)
PDB ID: 5rer Resolution: 1.88 Å Exp. Method: X-RAY DIFFRACTION
PMID: 33028810 DOI: 10.1038/s41467-020-18709-w
Protein
Protein Name: Replicase polyprotein 1ab
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2)
Gene Symbol: rep Gene ID: 43740578
Protein Class: HYDROLASE
Ligand
Ligand Name:   PCM-0102615
Canonical SMILES:   Fc1ccc(cc1)[C@H]2CN(CCO2)C(=O)CCl
Standard InChI:   InChI=1S/C12H13ClFNO2/c13-7-12(16)15-5-6-17-11(8-15)9-1-3-10(14)4-2-9/h1-4,11H,5-8H2/t11-/m1/s1
HET Code:   T3J PubChem:   51889847
DrugBank:   - ChEMBL:   -
Molecular Formula:   C12H13ClFNO2 Mol. Weight:   257.0619 logP:   1.9644
HBD:   0 HBA:   2
#Rotatable Bonds:   2 TPSA:   29.54
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution CYS 145 A 22.69 14.14 Halomethyl Carbonyl
Binding Affinity
-