PDB Entry (5rep) |
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PDB ID: 5rep | Resolution: 1.81 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33028810 | DOI: 10.1038/s41467-020-18709-w | |
Protein |
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Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: PCM-0102201 | ||
Canonical SMILES: Fc1cccc(F)c1S(=O)(=O)N2CCN(CC2)C(=O)CCl | ||
Standard InChI: InChI=1S/C12H13ClF2N2O3S/c13-8-11(18)16-4-6-17(7-5-16)21(19,20)12-9(14)2-1-3-10(12)15/h1-3H,4-8H2 | ||
HET Code: T3G | PubChem: 16226881 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C12H13ClF2N2O3S | Mol. Weight: 338.03033 | logP: 1.0365 |
HBD: 0 | HBA: 3 | |
#Rotatable Bonds: 3 | TPSA: 57.69 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 145 | A | 24.18 | 13.23 | Halomethyl Carbonyl |
Binding Affinity |
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