PDB Entry (5rep)
PDB ID: 5rep Resolution: 1.81 Å Exp. Method: X-RAY DIFFRACTION
PMID: 33028810 DOI: 10.1038/s41467-020-18709-w
Protein
Protein Name: Replicase polyprotein 1ab
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2)
Gene Symbol: rep Gene ID: 43740578
Protein Class: HYDROLASE
Ligand
Ligand Name:   PCM-0102201
Canonical SMILES:   Fc1cccc(F)c1S(=O)(=O)N2CCN(CC2)C(=O)CCl
Standard InChI:   InChI=1S/C12H13ClF2N2O3S/c13-8-11(18)16-4-6-17(7-5-16)21(19,20)12-9(14)2-1-3-10(12)15/h1-3H,4-8H2
HET Code:   T3G PubChem:   16226881
DrugBank:   - ChEMBL:   -
Molecular Formula:   C12H13ClF2N2O3S Mol. Weight:   338.03033 logP:   1.0365
HBD:   0 HBA:   3
#Rotatable Bonds:   3 TPSA:   57.69
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution CYS 145 A 24.18 13.23 Halomethyl Carbonyl
Binding Affinity
-