PDB Entry (5reo) |
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PDB ID: 5reo | Resolution: 1.88 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33028810 | DOI: 10.1038/s41467-020-18709-w | |
Protein |
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Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: PCM-0102578 | ||
Canonical SMILES: ClCC(=O)NCc(c1)ccc(c12)OCO2 | ||
Standard InChI: InChI=1S/C10H10ClNO3/c11-4-10(13)12-5-7-1-2-8-9(3-7)15-6-14-8/h1-3H,4-6H2,(H,12,13) | ||
HET Code: T2Y | PubChem: 736835 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C10H10ClNO3 | Mol. Weight: 227.03493 | logP: 1.2703 |
HBD: 1 | HBA: 3 | |
#Rotatable Bonds: 3 | TPSA: 47.56 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 145 | A | 21.64 | 13.45 | Halomethyl Carbonyl |
Binding Affinity |
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