PDB Entry (5reo)
PDB ID: 5reo Resolution: 1.88 Å Exp. Method: X-RAY DIFFRACTION
PMID: 33028810 DOI: 10.1038/s41467-020-18709-w
Protein
Protein Name: Replicase polyprotein 1ab
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2)
Gene Symbol: rep Gene ID: 43740578
Protein Class: HYDROLASE
Ligand
Ligand Name:   PCM-0102578
Canonical SMILES:   ClCC(=O)NCc(c1)ccc(c12)OCO2
Standard InChI:   InChI=1S/C10H10ClNO3/c11-4-10(13)12-5-7-1-2-8-9(3-7)15-6-14-8/h1-3H,4-6H2,(H,12,13)
HET Code:   T2Y PubChem:   736835
DrugBank:   - ChEMBL:   -
Molecular Formula:   C10H10ClNO3 Mol. Weight:   227.03493 logP:   1.2703
HBD:   1 HBA:   3
#Rotatable Bonds:   3 TPSA:   47.56
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution CYS 145 A 21.64 13.45 Halomethyl Carbonyl
Binding Affinity
-