PDB Entry (5ren)
PDB ID: 5ren Resolution: 2.15 Å Exp. Method: X-RAY DIFFRACTION
PMID: 33028810 DOI: 10.1038/s41467-020-18709-w
Protein
Protein Name: Replicase polyprotein 1ab
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2)
Gene Symbol: rep Gene ID: 43740578
Protein Class: HYDROLASE
Ligand
Ligand Name:   PCM-0102425
Canonical SMILES:   ClCC(=O)N1CCC[C@H](C1)c(s2)nc(c23)cccc3
Standard InChI:   InChI=1S/C14H15ClN2OS/c15-8-13(18)17-7-3-4-10(9-17)14-16-11-5-1-2-6-12(11)19-14/h1-2,5-6,10H,3-4,7-9H2/t10-/m1/s1
HET Code:   T2V PubChem:   9115242
DrugBank:   - ChEMBL:   -
Molecular Formula:   C14H15ClN2OS Mol. Weight:   294.05936 logP:   3.2411
HBD:   0 HBA:   3
#Rotatable Bonds:   2 TPSA:   33.2
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution CYS 145 A 23.04 13.77 Halomethyl Carbonyl
Binding Affinity
-