PDB Entry (5ren) |
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PDB ID: 5ren | Resolution: 2.15 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33028810 | DOI: 10.1038/s41467-020-18709-w | |
Protein |
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Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: PCM-0102425 | ||
Canonical SMILES: ClCC(=O)N1CCC[C@H](C1)c(s2)nc(c23)cccc3 | ||
Standard InChI: InChI=1S/C14H15ClN2OS/c15-8-13(18)17-7-3-4-10(9-17)14-16-11-5-1-2-6-12(11)19-14/h1-2,5-6,10H,3-4,7-9H2/t10-/m1/s1 | ||
HET Code: T2V | PubChem: 9115242 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C14H15ClN2OS | Mol. Weight: 294.05936 | logP: 3.2411 |
HBD: 0 | HBA: 3 | |
#Rotatable Bonds: 2 | TPSA: 33.2 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 145 | A | 23.04 | 13.77 | Halomethyl Carbonyl |
Binding Affinity |
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