PDB Entry (5rem)
PDB ID: 5rem Resolution: 1.96 Å Exp. Method: X-RAY DIFFRACTION
PMID: 33028810 DOI: 10.1038/s41467-020-18709-w
Protein
Protein Name: Replicase polyprotein 1ab
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2)
Gene Symbol: rep Gene ID: 43740578
Protein Class: HYDROLASE
Ligand
Ligand Name:   PCM-0103016
Canonical SMILES:   [O-][N+](=O)c1ccccc1N2CCN(CC2)C(=O)CCl
Standard InChI:   InChI=1S/C12H14ClN3O3/c13-9-12(17)15-7-5-14(6-8-15)10-3-1-2-4-11(10)16(18)19/h1-4H,5-9H2
HET Code:   T2J PubChem:   10062398
DrugBank:   - ChEMBL:   -
Molecular Formula:   C12H14ClN3O3 Mol. Weight:   283.07236 logP:   1.4822
HBD:   0 HBA:   4
#Rotatable Bonds:   3 TPSA:   66.69
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution CYS 145 A 23.47 13.96 Halomethyl Carbonyl
Binding Affinity
-