PDB Entry (5rel)
PDB ID: 5rel Resolution: 1.62 Å Exp. Method: X-RAY DIFFRACTION
PMID: 33028810 DOI: 10.1038/s41467-020-18709-w
Protein
Protein Name: Replicase polyprotein 1ab
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2)
Gene Symbol: rep Gene ID: 43740578
Protein Class: HYDROLASE
Ligand
Ligand Name:   PCM-0102340
Canonical SMILES:   Cc1cccc(CN2CCN(CC2)C(=O)CCl)c1
Standard InChI:   InChI=1S/C14H19ClN2O/c1-12-3-2-4-13(9-12)11-16-5-7-17(8-6-16)14(18)10-15/h2-4,9H,5-8,10-11H2,1H3
HET Code:   T2G PubChem:   2454965
DrugBank:   - ChEMBL:   CHEMBL1581233
Molecular Formula:   C14H19ClN2O Mol. Weight:   266.1186 logP:   1.87802
HBD:   0 HBA:   2
#Rotatable Bonds:   3 TPSA:   23.55
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution CYS 145 A 23.99 13.18 Halomethyl Carbonyl
Binding Affinity
-