PDB Entry (5rel) |
||
| ||
PDB ID: 5rel | Resolution: 1.62 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33028810 | DOI: 10.1038/s41467-020-18709-w | |
Protein |
|
Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
||
Ligand Name: PCM-0102340 | ||
Canonical SMILES: Cc1cccc(CN2CCN(CC2)C(=O)CCl)c1 | ||
Standard InChI: InChI=1S/C14H19ClN2O/c1-12-3-2-4-13(9-12)11-16-5-7-17(8-6-16)14(18)10-15/h2-4,9H,5-8,10-11H2,1H3 | ||
HET Code: T2G | PubChem: 2454965 | |
DrugBank: - | ChEMBL: CHEMBL1581233 | |
Molecular Formula: C14H19ClN2O | Mol. Weight: 266.1186 | logP: 1.87802 |
HBD: 0 | HBA: 2 | |
#Rotatable Bonds: 3 | TPSA: 23.55 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 145 | A | 23.99 | 13.18 | Halomethyl Carbonyl |
Binding Affinity |
||
- |