PDB Entry (5rej)
PDB ID: 5rej Resolution: 1.72 Å Exp. Method: X-RAY DIFFRACTION
PMID: 33028810 DOI: 10.1038/s41467-020-18709-w
Protein
Protein Name: Replicase polyprotein 1ab
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2)
Gene Symbol: rep Gene ID: 43740578
Protein Class: HYDROLASE
Ligand
Ligand Name:   PCM-0102241
Canonical SMILES:   ClCC(=O)N1CCN(CC1)S(=O)(=O)c2cccs2
Standard InChI:   InChI=1S/C10H13ClN2O3S2/c11-8-9(14)12-3-5-13(6-4-12)18(15,16)10-2-1-7-17-10/h1-2,7H,3-6,8H2
HET Code:   T1V PubChem:   16226903
DrugBank:   - ChEMBL:   -
Molecular Formula:   C10H13ClN2O3S2 Mol. Weight:   308.0056 logP:   0.8198
HBD:   0 HBA:   4
#Rotatable Bonds:   3 TPSA:   57.69
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution CYS 145 A 24.3 12.35 Halomethyl Carbonyl
Binding Affinity
-