PDB Entry (5rej) |
||
| ||
PDB ID: 5rej | Resolution: 1.72 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 33028810 | DOI: 10.1038/s41467-020-18709-w | |
Protein |
|
Protein Name: Replicase polyprotein 1ab | |
Uniprot ID/ACC: P0DTD1 (R1AB_SARS2) | Organism: Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2) |
Gene Symbol: rep | Gene ID: 43740578 |
Protein Class: HYDROLASE |
Ligand |
||
Ligand Name: PCM-0102241 | ||
Canonical SMILES: ClCC(=O)N1CCN(CC1)S(=O)(=O)c2cccs2 | ||
Standard InChI: InChI=1S/C10H13ClN2O3S2/c11-8-9(14)12-3-5-13(6-4-12)18(15,16)10-2-1-7-17-10/h1-2,7H,3-6,8H2 | ||
HET Code: T1V | PubChem: 16226903 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C10H13ClN2O3S2 | Mol. Weight: 308.0056 | logP: 0.8198 |
HBD: 0 | HBA: 4 | |
#Rotatable Bonds: 3 | TPSA: 57.69 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 145 | A | 24.3 | 12.35 | Halomethyl Carbonyl |
Binding Affinity |
||
- |