PDB Entry (3zeb) |
||
| ||
PDB ID: 3zeb | Resolution: 2.2 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 23359682 | DOI: 10.1073/PNAS.1215076110 | |
Protein |
|
Protein Name: Rhomboid protease GlpG | |
Uniprot ID/ACC: P09391 (GLPG_ECOLI) | Organism: Escherichia coli (strain K12) |
Gene Symbol: glpG | Gene ID: 58460244 |
Protein Class: HYDROLASE |
Ligand |
||
Ligand Name: 7-AMINO-3-(2-PHENYLETHOXY)-4-CHLOROISOCOUMARIN | ||
Canonical SMILES: c1cc(N)cc(c12)c(=O)oc(c2Cl)OCCc3ccccc3 | ||
Standard InChI: InChI=1S/C17H14ClNO3/c18-15-13-7-6-12(19)10-14(13)16(20)22-17(15)21-9-8-11-4-2-1-3-5-11/h1-7,10H,8-9,19H2 | ||
HET Code: SV1 | PubChem: 13654068 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C17H14ClNO3 | Mol. Weight: 315.06622 | logP: 3.6501 |
HBD: 1 | HBA: 4 | |
#Rotatable Bonds: 4 | TPSA: 65.46 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Lactone Addition | HIS 150 | A | 48.72 | 4.84 | 4-Halo-Alpha-Pyrone | |
Lactone Addition | SER 201 | A | 14.54 | - | 4-Halo-Alpha-Pyrone |
Binding Affinity |
|
Database Name | Value |
PDBBind | IC50 : 740 nM |