PDB Entry (3zeb)
PDB ID: 3zeb Resolution: 2.2 Å Exp. Method: X-RAY DIFFRACTION
PMID: 23359682 DOI: 10.1073/PNAS.1215076110
Protein
Protein Name: Rhomboid protease GlpG
Uniprot ID/ACC: P09391 (GLPG_ECOLI) Organism: Escherichia coli (strain K12)
Gene Symbol: glpG Gene ID: 58460244
Protein Class: HYDROLASE
Ligand
Ligand Name:   7-AMINO-3-(2-PHENYLETHOXY)-4-CHLOROISOCOUMARIN
Canonical SMILES:   c1cc(N)cc(c12)c(=O)oc(c2Cl)OCCc3ccccc3
Standard InChI:   InChI=1S/C17H14ClNO3/c18-15-13-7-6-12(19)10-14(13)16(20)22-17(15)21-9-8-11-4-2-1-3-5-11/h1-7,10H,8-9,19H2
HET Code:   SV1 PubChem:   13654068
DrugBank:   - ChEMBL:   -
Molecular Formula:   C17H14ClNO3 Mol. Weight:   315.06622 logP:   3.6501
HBD:   1 HBA:   4
#Rotatable Bonds:   4 TPSA:   65.46
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Lactone Addition HIS 150 A 48.72 4.84 4-Halo-Alpha-Pyrone
Lactone Addition SER 201 A 14.54 - 4-Halo-Alpha-Pyrone
Binding Affinity
Database Name Value
PDBBind IC50 : 740 nM