PDB Entry (1w3n) |
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PDB ID: 1w3n | Resolution: 2.1 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 15265860 | DOI: 10.1074/jbc.M407702200 | |
Protein |
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Protein Name: 2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6-phosphogalactonate aldolase | |
Uniprot ID/ACC: O54288 (KDGA_SACSO) | Organism: Saccharolobus solfataricus (Sulfolobus solfataricus) |
Gene Symbol: - | Gene ID: 44128913 |
Protein Class: LYASE |
Ligand |
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Ligand Name: D-KDG | ||
Canonical SMILES: OC[C@@H](O)[C@@H](O)CC(=O)C(O)=O | ||
Standard InChI: InChI=1S/C6H10O6/c7-2-5(10)3(8)1-4(9)6(11)12/h3,5,7-8,10H,1-2H2,(H,11,12)/t3-,5+/m0/s1 | ||
HET Code: SSH | PubChem: 161227 | |
DrugBank: - | ChEMBL: CHEMBL1233832 | |
Molecular Formula: C6H10O6 | Mol. Weight: 178.04774 | logP: -2.2557 |
HBD: 4 | HBA: 5 | |
#Rotatable Bonds: 5 | TPSA: 115.06 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Imine Condensation | LYS 155 | A | 13.14 | 6.07 | Ketone |
Binding Affinity |
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