PDB Entry (1w10)
PDB ID: 1w10 Resolution: 2.0 Å Exp. Method: X-RAY DIFFRACTION
PMID: 12684001 DOI: 10.1016/s0022-2836(03)00267-5
Protein
Protein Name: Urokinase-type plasminogen activator
Uniprot ID/ACC: P00749 (UROK_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: PLAU Gene ID: 5328
Protein Class: HYDROLASE
Ligand
Ligand Name:   uPA-I2
Canonical SMILES:   CC(C)COC(=O)N[C@H](CO)C(=O)N[C@@H](C)C(=O)N[C@@H](CCCNC(N)=N)C=O
Standard InChI:   InChI=1S/C17H32N6O6/c1-10(2)9-29-17(28)23-13(8-25)15(27)21-11(3)14(26)22-12(7-24)5-4-6-20-16(18)19/h7,10-13,25H,4-6,8-9H2,1-3H3,(H,21,27)(H,22,26)(H,23,28)(H4,18,19,20)/t11-,12-,13+/m0/s1
HET Code:   SJ1 PubChem:   9931721
DrugBank:   - ChEMBL:   CHEMBL1235950
Molecular Formula:   C17H32N6O6 Mol. Weight:   416.23834 logP:   -1.81883
HBD:   7 HBA:   7
#Rotatable Bonds:   13 TPSA:   195.73
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Hemi(thio)acetalization SER 195 U 16.21 - Aldehyde
Binding Affinity
Database Name Value
PDBBind Ki : 28 nM