PDB Entry (4pid)
PDB ID: 4pid Resolution: 1.59 Å Exp. Method: X-RAY DIFFRACTION
PMID: 25147618 DOI: 10.1021/ml500224t
Protein
Protein Name: Protease
Uniprot ID/ACC: P03252 (PRO_ADE02) Organism: Human adenovirus C serotype 2 (HAdV-2) (Human adenovirus 2)
Gene Symbol: L3 Gene ID: 2652998
Protein Class: HYDROLASE
Ligand
Ligand Name:   N-benzyl-2-cyanopyrimidine-5-carboxamide
Canonical SMILES:   N#Cc1ncc(cn1)C(=O)NCc2ccccc2
Standard InChI:   InChI=1S/C13H10N4O/c14-6-12-15-8-11(9-16-12)13(18)17-7-10-4-2-1-3-5-10/h1-5,8-9H,7H2,(H,17,18)
HET Code:   2UQ PubChem:   118711629
DrugBank:   - ChEMBL:   CHEMBL3326421
Molecular Formula:   C13H10N4O Mol. Weight:   238.08546 logP:   1.27828
HBD:   1 HBA:   4
#Rotatable Bonds:   3 TPSA:   78.67
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Addition to a Triple Bond CYS 122 A 14.5 7.84 Nitrile
Binding Affinity
Database Name Value
PDBBind IC50 : 24000 nM