PDB Entry (1h7r) |
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PDB ID: 1h7r | Resolution: 2.0 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 11545591 | DOI: 10.1006/JMBI.2001.4947 | |
Protein |
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Protein Name: Delta-aminolevulinic acid dehydratase | |
Uniprot ID/ACC: P05373 (HEM2_YEAST) | Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) |
Gene Symbol: HEM2 | Gene ID: 852842 |
Protein Class: LYASE |
Ligand |
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Ligand Name: SUCCINYLACETONE | ||
Canonical SMILES: CC(=O)CC(=O)CCC(O)=O | ||
Standard InChI: InChI=1S/C7H10O4/c1-5(8)4-6(9)2-3-7(10)11/h2-4H2,1H3,(H,10,11) | ||
HET Code: SHU | PubChem: 5312 | |
DrugBank: - | ChEMBL: CHEMBL222824 | |
Molecular Formula: C7H10O4 | Mol. Weight: 158.0579 | logP: 0.3994 |
HBD: 1 | HBA: 3 | |
#Rotatable Bonds: 5 | TPSA: 71.44 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Imine Condensation | LYS 263 | A | 16.23 | 4.74 | Ketone |
Binding Affinity |
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