PDB Entry (1h7r)
PDB ID: 1h7r Resolution: 2.0 Å Exp. Method: X-RAY DIFFRACTION
PMID: 11545591 DOI: 10.1006/JMBI.2001.4947
Protein
Protein Name: Delta-aminolevulinic acid dehydratase
Uniprot ID/ACC: P05373 (HEM2_YEAST) Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Gene Symbol: HEM2 Gene ID: 852842
Protein Class: LYASE
Ligand
Ligand Name:   SUCCINYLACETONE
Canonical SMILES:   CC(=O)CC(=O)CCC(O)=O
Standard InChI:   InChI=1S/C7H10O4/c1-5(8)4-6(9)2-3-7(10)11/h2-4H2,1H3,(H,10,11)
HET Code:   SHU PubChem:   5312
DrugBank:   - ChEMBL:   CHEMBL222824
Molecular Formula:   C7H10O4 Mol. Weight:   158.0579 logP:   0.3994
HBD:   1 HBA:   3
#Rotatable Bonds:   5 TPSA:   71.44
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Imine Condensation LYS 263 A 16.23 4.74 Ketone
Binding Affinity
-