PDB Entry (1w31) |
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PDB ID: 1w31 | Resolution: 1.9 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 16131755 | DOI: 10.1107/S0907444905018834 | |
Protein |
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Protein Name: Delta-aminolevulinic acid dehydratase | |
Uniprot ID/ACC: P05373 (HEM2_YEAST) | Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) |
Gene Symbol: HEM2 | Gene ID: 852842 |
Protein Class: LYASE |
Ligand |
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Ligand Name: 5-HYDROXYLAEVULINIC ACID | ||
Canonical SMILES: OCC(=O)CCC(O)=O | ||
Standard InChI: InChI=1S/C5H8O4/c6-3-4(7)1-2-5(8)9/h6H,1-3H2,(H,8,9) | ||
HET Code: SHO | PubChem: 10080438 | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C5H8O4 | Mol. Weight: 132.04225 | logP: -0.5874 |
HBD: 2 | HBA: 3 | |
#Rotatable Bonds: 4 | TPSA: 74.6 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Imine Condensation | LYS 263 | A | 13.6 | 4.22 | Ketone |
Binding Affinity |
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Database Name | Value |
PDBBind | Ki : 250000 nM |
Binding MOAD | Ki : 250000 nM |