PDB Entry (4h3d) |
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PDB ID: 4h3d | Resolution: 1.95 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: - | |
Protein |
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Protein Name: 3-dehydroquinate dehydratase | |
Uniprot ID/ACC: Q186A6 (AROD_CLOD6) | Organism: Clostridioides difficile (strain 630) (Peptoclostridium difficile) |
Gene Symbol: aroD | Gene ID: 57297922 |
Protein Class: LYASE |
Ligand |
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Ligand Name: 6-(bromomethyl)-5-hydroxy-4-oxo-4H-pyran-2-carboxylic acid | ||
Canonical SMILES: OC(=O)c1cc(=O)c(O)c(CBr)o1 | ||
Standard InChI: InChI=1S/C7H5BrO5/c8-2-5-6(10)3(9)1-4(13-5)7(11)12/h1,10H,2H2,(H,11,12) | ||
HET Code: SHL | PubChem: - | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C7H5BrO5 | Mol. Weight: 247.93204 | logP: 0.9385 |
HBD: 2 | HBA: 4 | |
#Rotatable Bonds: 2 | TPSA: 87.74 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | LYS 171 | D | 12.27 | 7.56 | Alkyl Halide |
Binding Affinity |
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