PDB Entry (4h3d)
PDB ID: 4h3d Resolution: 1.95 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: -
Protein
Protein Name: 3-dehydroquinate dehydratase
Uniprot ID/ACC: Q186A6 (AROD_CLOD6) Organism: Clostridioides difficile (strain 630) (Peptoclostridium difficile)
Gene Symbol: aroD Gene ID: 57297922
Protein Class: LYASE
Ligand
Ligand Name:   6-(bromomethyl)-5-hydroxy-4-oxo-4H-pyran-2-carboxylic acid
Canonical SMILES:   OC(=O)c1cc(=O)c(O)c(CBr)o1
Standard InChI:   InChI=1S/C7H5BrO5/c8-2-5-6(10)3(9)1-4(13-5)7(11)12/h1,10H,2H2,(H,11,12)
HET Code:   SHL PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C7H5BrO5 Mol. Weight:   247.93204 logP:   0.9385
HBD:   2 HBA:   4
#Rotatable Bonds:   2 TPSA:   87.74
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution LYS 171 D 12.27 7.56 Alkyl Halide
Binding Affinity
-