PDB Entry (1qfm) |
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PDB ID: 1qfm | Resolution: 1.4 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 9695945 | DOI: 10.1016/S0092-8674(00)81416-6 | |
Protein |
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Protein Name: Prolyl endopeptidase | |
Uniprot ID/ACC: P23687 (PPCE_PIG) | Organism: Sus scrofa (Pig) |
Gene Symbol: PREP | Gene ID: 445540 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: 1-thioxy-3-hydroxy-acetone | ||
Canonical SMILES: OCC(=O)CSO | ||
Standard InChI: InChI=1S/C3H6O3S/c4-1-3(5)2-7-6/h4,6H,1-2H2 | ||
HET Code: SGL | PubChem: - | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C3H6O3S | Mol. Weight: 122.00376 | logP: -0.246 |
HBD: 2 | HBA: 4 | |
#Rotatable Bonds: 3 | TPSA: 57.53 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Hemi(thio)acetalization | SER 554 | A | 21.19 | - | Ketone |
Binding Affinity |
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