PDB Entry (1x83)
PDB ID: 1x83 Resolution: 1.8 Å Exp. Method: X-RAY DIFFRACTION
PMID: 15643873 DOI: 10.1021/ja040207i
Protein
Protein Name: Isopentenyl-diphosphate Delta-isomerase
Uniprot ID/ACC: Q46822 (IDI_ECOLI) Organism: Escherichia coli (strain K12)
Gene Symbol: idi Gene ID: 949020
Protein Class: ISOMERASE
Ligand
Ligand Name:   (S)-Phosphostim
Canonical SMILES:   BrC[C@@](C)(O)CCOP(=O)([O-])OP(=O)([O-])[O-]
Standard InChI:   InChI=1S/C5H13BrO8P2/c1-5(7,4-6)2-3-13-16(11,12)14-15(8,9)10/h7H,2-4H2,1H3,(H,11,12)(H2,8,9,10)/p-3/t5-/m0/s1
HET Code:   SBH PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C5H10BrO8P2-3 Mol. Weight:   338.90506 logP:   -1.1473
HBD:   1 HBA:   8
#Rotatable Bonds:   7 TPSA:   142.01
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution CYS 67 A 29.01 12.89 Alkyl Halide
Binding Affinity
-