PDB Entry (1x83) |
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PDB ID: 1x83 | Resolution: 1.8 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 15643873 | DOI: 10.1021/ja040207i | |
Protein |
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Protein Name: Isopentenyl-diphosphate Delta-isomerase | |
Uniprot ID/ACC: Q46822 (IDI_ECOLI) | Organism: Escherichia coli (strain K12) |
Gene Symbol: idi | Gene ID: 949020 |
Protein Class: ISOMERASE |
Ligand |
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Ligand Name: (S)-Phosphostim | ||
Canonical SMILES: BrC[C@@](C)(O)CCOP(=O)([O-])OP(=O)([O-])[O-] | ||
Standard InChI: InChI=1S/C5H13BrO8P2/c1-5(7,4-6)2-3-13-16(11,12)14-15(8,9)10/h7H,2-4H2,1H3,(H,11,12)(H2,8,9,10)/p-3/t5-/m0/s1 | ||
HET Code: SBH | PubChem: - | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C5H10BrO8P2-3 | Mol. Weight: 338.90506 | logP: -1.1473 |
HBD: 1 | HBA: 8 | |
#Rotatable Bonds: 7 | TPSA: 142.01 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Aliphatic Subsititution | CYS 67 | A | 29.01 | 12.89 | Alkyl Halide |
Binding Affinity |
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