PDB Entry (4phh) |
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PDB ID: 4phh | Resolution: 2.35 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 26178622 | DOI: 10.1038/ncomms8773 | |
Protein |
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Protein Name: Ypt/Rab-type GTPase YPT7 | |
Uniprot ID/ACC: P32939 (YPT7_YEAST) | Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) |
Gene Symbol: YPT7 | Gene ID: 855012 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: ({[(2R,3S,4R,5R)-3,4-dihydroxy-5-(6-oxo-2-{[3-(prop-2-enamido)propyl]amino}-3H-purin-9-yl)oxolan-2-yl]methoxy(hydroxy)phosphoryl}oxy(hydroxy)phosphoryl)aminophosphonic acid | ||
Canonical SMILES: O[C@@H]1[C@@H](COP(O)(=O)OP(O)(=O)NP(O)(O)=O)O[C@H]([C@@H]1O)n1cnc2c1nc(NCCCNC(=O)C=C)[nH]c2=O | ||
Standard InChI: InChI=1S/C16H26N7O14P3/c1-2-9(24)17-4-3-5-18-16-20-13-10(14(27)21-16)19-7-23(13)15-12(26)11(25)8(36-15)6-35-40(33,34)37-39(31,32)22-38(28,29)30/h2,7-8,11-12,15,25-26H,1,3-6H2,(H,17,24)(H,33,34)(H2,18,20,21,27)(H4,22,28,29,30,31,32)/t8-,11-,12-,15-/m1/s1 | ||
HET Code: 2UK | PubChem: - | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C16H26N7O14P3 | Mol. Weight: 633.0751 | logP: -2.2407 |
HBD: 10 | HBA: 14 | |
#Rotatable Bonds: 14 | TPSA: 317.01 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Michael Addition | CYS 35 | A | 88.15 | 9.52 | Vinyl Carbonyl |
Binding Affinity |
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