PDB Entry (5y41)
PDB ID: 5y41 Resolution: 2.05 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32451509 DOI: 10.1038/s41589-020-0553-6
Protein
Protein Name: Nuclear receptor subfamily 4 group A member 2
Uniprot ID/ACC: P43354 (NR4A2_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: NR4A2 Gene ID: 4929
Protein Class: TRANSCRIPTION REGULATOR
Ligand
Ligand Name:   PROSTAGLANDIN A1
Canonical SMILES:   CCCCC[C@H](O)\C=C\[C@H]1C=CC(=O)[C@@H]1CCCCCCC(O)=O
Standard InChI:   InChI=1S/C20H32O4/c1-2-3-6-9-17(21)14-12-16-13-15-19(22)18(16)10-7-4-5-8-11-20(23)24/h12-18,21H,2-11H2,1H3,(H,23,24)/b14-12+/t16-,17-,18+/m0/s1
HET Code:   RPG PubChem:   5281912
DrugBank:   - ChEMBL:   CHEMBL1084644
Molecular Formula:   C20H32O4 Mol. Weight:   336.23007 logP:   4.2803
HBD:   2 HBA:   3
#Rotatable Bonds:   13 TPSA:   74.6
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Michael Addition CYS 566 A 21.31 14.32 Vinyl Carbonyl
Binding Affinity
-