PDB Entry (6vua)
PDB ID: 6vua Resolution: 1.5 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32537509 DOI: 10.1126/sciadv.aba6752
Protein
Protein Name: ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1
Uniprot ID/ACC: P28907 (CD38_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: CD38 Gene ID: 952
Protein Class: HYDROLASE
Ligand
Ligand Name:   2'-Cl-araNAD+
Canonical SMILES:   NC(=O)c1cc[n+](cc1)[C@H]1O[C@H](COP(O)(=O)OP(O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n2cnc3c(N)ncnc23)[C@@H](O)[C@@H]1Cl
Standard InChI:   InChI=1S/C21H26ClN7O13P2/c22-12-14(30)10(40-20(12)28-3-1-9(2-4-28)18(24)33)5-38-43(34,35)42-44(36,37)39-6-11-15(31)16(32)21(41-11)29-8-27-13-17(23)25-7-26-19(13)29/h1-4,7-8,10-12,14-16,20-21,30-32H,5-6H2,(H5-,23,24,25,26,33,34,35,36,37)/p+1/t10-,11-,12+,14-,15-,16-,20+,21-/m1/s1
HET Code:   ROJ PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C21H27ClN7O13P2+ Mol. Weight:   682.0825 logP:   -1.7694
HBD:   7 HBA:   16
#Rotatable Bonds:   11 TPSA:   298.03
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Aliphatic Subsititution GLU 226 A 19.79 10.13 Aminium Ion
Binding Affinity
-