PDB Entry (4phg) |
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PDB ID: 4phg | Resolution: 1.9 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 26178622 | DOI: 10.1038/ncomms8773 | |
Protein |
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Protein Name: Ypt/Rab-type GTPase YPT7 | |
Uniprot ID/ACC: P32939 (YPT7_YEAST) | Organism: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) |
Gene Symbol: YPT7 | Gene ID: 855012 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: ({[({[(2R,3S,4R,5R)-3,4-dihydroxy-5-(6-oxo-2-{[3-(prop-2-enamido)propyl]amino}-6,9-dihydro-3H-purin-9-yl)oxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)phosphonic acid | ||
Canonical SMILES: O[C@@H]1[C@@H](COP(O)(=O)OP(O)(=O)OP(O)(O)=O)O[C@H]([C@@H]1O)n1cnc2c1nc(NCCCNC(=O)C=C)[nH]c2=O | ||
Standard InChI: InChI=1S/C16H25N6O15P3/c1-2-9(23)17-4-3-5-18-16-20-13-10(14(26)21-16)19-7-22(13)15-12(25)11(24)8(35-15)6-34-39(30,31)37-40(32,33)36-38(27,28)29/h2,7-8,11-12,15,24-25H,1,3-6H2,(H,17,23)(H,30,31)(H,32,33)(H2,27,28,29)(H2,18,20,21,26)/t8-,11-,12-,15-/m1/s1 | ||
HET Code: 2UJ | PubChem: - | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C16H25N6O15P3 | Mol. Weight: 634.0591 | logP: -1.8137 |
HBD: 9 | HBA: 15 | |
#Rotatable Bonds: 14 | TPSA: 314.21 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Michael Addition | CYS 35 | A | 101.4 | - | Vinyl Carbonyl |
Binding Affinity |
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