PDB Entry (6v1j)
PDB ID: 6v1j Resolution: 1.3 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32150407 DOI: 10.1021/acs.jmedchem.9b01976
Protein
Protein Name: Carbapenem-hydrolyzing beta-lactamase KPC
Uniprot ID/ACC: Q9F663 (BLKPC_KLEPN) Organism: Klebsiella pneumoniae
Gene Symbol: bla Gene ID: 56982589
Protein Class: HYDROLASE
Ligand
Ligand Name:   QPX7728
Canonical SMILES:   OB1Oc2c(ccc(F)c2C(O)=O)[C@H]2C[C@@H]12
Standard InChI:   InChI=1S/C10H8BFO4/c12-7-2-1-4-5-3-6(5)11(15)16-9(4)8(7)10(13)14/h1-2,5-6,15H,3H2,(H,13,14)/t5-,6-/m1/s1
HET Code:   RM9 PubChem:   140830474
DrugBank:   - ChEMBL:   -
Molecular Formula:   C10H8BFO4 Mol. Weight:   222.04997 logP:   1.2543
HBD:   2 HBA:   3
#Rotatable Bonds:   1 TPSA:   66.76
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Borylation SER 70 A 13.38 - Boronic Acid
Binding Affinity
-