PDB Entry (6q6l)
PDB ID: 6q6l Resolution: 1.81 Å Exp. Method: X-RAY DIFFRACTION
PMID: 30811188 DOI: 10.1021/jacs.9b00056
Protein
Protein Name: Lysosomal acid glucosylceramidase
Uniprot ID/ACC: P04062 (GLCM_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: GBA Gene ID: 2629
Protein Class: HYDROLASE
Ligand
Ligand Name:   ME656
Canonical SMILES:   [C@H]12[C@@H](O2)[C@H](O)[C@@H](O)[C@H](O)[C@H]1Cn3cc(nn3)CCCOCC45C[C@H]6C[C@@H](C4)C[C@H](C6)C5
Standard InChI:   InChI=1S/C23H35N3O5/c27-18-17(21-22(31-21)20(29)19(18)28)11-26-10-16(24-25-26)2-1-3-30-12-23-7-13-4-14(8-23)6-15(5-13)9-23/h10,13-15,17-22,27-29H,1-9,11-12H2/t13-,14+,15-,17-,18-,19+,20-,21-,22+,23?/m1/s1
HET Code:   RJR PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C23H35N3O5 Mol. Weight:   433.25766 logP:   0.9236
HBD:   3 HBA:   8
#Rotatable Bonds:   8 TPSA:   113.16
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Epoxide Opening GLU 340 A 19.98 - Epoxide
Binding Affinity
-