PDB Entry (3dzf)
PDB ID: 3dzf Resolution: 2.01 Å Exp. Method: X-RAY DIFFRACTION
PMID: 18940667 DOI: 10.1016/j.chembiol.2008.08.007
Protein
Protein Name: ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1
Uniprot ID/ACC: P28907 (CD38_HUMAN) Organism: Homo sapiens (Human)
Gene Symbol: CD38 Gene ID: 952
Protein Class: HYDROLASE
Ligand
Ligand Name:   ara-F-ribose-5'-phosphate
Canonical SMILES:   O=P([O-])([O-])OC[C@@H]1[C@@H](O)[C@H](F)[C@H](O1)O
Standard InChI:   InChI=1S/C5H10FO7P/c6-3-4(7)2(13-5(3)8)1-12-14(9,10)11/h2-5,7-8H,1H2,(H2,9,10,11)/p-2/t2-,3+,4-,5+/m1/s1
HET Code:   RF5 PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C5H8FO7P-2 Mol. Weight:   230.00026 logP:   -2.7521
HBD:   2 HBA:   7
#Rotatable Bonds:   3 TPSA:   122.11
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Nucleophilic Acyl Substitution GLU 226 A 19.22 9.28 Hemiacetal
Binding Affinity
-