PDB Entry (3dzf) |
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PDB ID: 3dzf | Resolution: 2.01 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 18940667 | DOI: 10.1016/j.chembiol.2008.08.007 | |
Protein |
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Protein Name: ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 | |
Uniprot ID/ACC: P28907 (CD38_HUMAN) | Organism: Homo sapiens (Human) |
Gene Symbol: CD38 | Gene ID: 952 |
Protein Class: HYDROLASE |
Ligand |
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Ligand Name: ara-F-ribose-5'-phosphate | ||
Canonical SMILES: O=P([O-])([O-])OC[C@@H]1[C@@H](O)[C@H](F)[C@H](O1)O | ||
Standard InChI: InChI=1S/C5H10FO7P/c6-3-4(7)2(13-5(3)8)1-12-14(9,10)11/h2-5,7-8H,1H2,(H2,9,10,11)/p-2/t2-,3+,4-,5+/m1/s1 | ||
HET Code: RF5 | PubChem: - | |
DrugBank: - | ChEMBL: - | |
Molecular Formula: C5H8FO7P-2 | Mol. Weight: 230.00026 | logP: -2.7521 |
HBD: 2 | HBA: 7 | |
#Rotatable Bonds: 3 | TPSA: 122.11 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Nucleophilic Acyl Substitution | GLU 226 | A | 19.22 | 9.28 | Hemiacetal |
Binding Affinity |
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