PDB Entry (1mpl)
PDB ID: 1mpl Resolution: 1.12 Å Exp. Method: X-RAY DIFFRACTION
PMID: 12564922 DOI: 10.1021/bi0268955
Protein
Protein Name: D-alanyl-D-alanine carboxypeptidase
Uniprot ID/ACC: P15555 (DAC_STRSR) Organism: Streptomyces sp. (strain R61)
Gene Symbol: - Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   phenyl glycyl-l-alpha-aminopimelyl-epsilon-(d-2-aminoethyl)phosphonate
Canonical SMILES:   C[C@@H](NC(=O)CCCC[C@H](NC(=O)CN)C(O)=O)P(O)(=O)Oc1ccccc1
Standard InChI:   InChI=1S/C17H26N3O7P/c1-12(28(25,26)27-13-7-3-2-4-8-13)19-15(21)10-6-5-9-14(17(23)24)20-16(22)11-18/h2-4,7-8,12,14H,5-6,9-11,18H2,1H3,(H,19,21)(H,20,22)(H,23,24)(H,25,26)/t12-,14-/m0/s1
HET Code:   RE1 PubChem:   101231580
DrugBank:   - ChEMBL:   -
Molecular Formula:   C17H26N3O7P Mol. Weight:   415.15085 logP:   0.8015
HBD:   5 HBA:   6
#Rotatable Bonds:   12 TPSA:   168.05
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Phosphorylation SER 62 A 14.82 - Phosphonate
Binding Affinity
Database Name Value
PDBBind Ki : 0.17 nM , Ki : 170000 nM