PDB Entry (4adu) |
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PDB ID: 4adu | Resolution: 2.44 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 22244765 | DOI: 10.1016/J.STR.2011.11.015 | |
Protein |
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Protein Name: PYRIDOXINE BIOSYNTHETIC ENZYME PDX1 HOMOLOGUE, PUTATIVE | |
Uniprot ID/ACC: - | Organism: Plasmodium berghei |
Gene Symbol: - | Gene ID: - |
Protein Class: TRANSFERASE |
Ligand |
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Ligand Name: RIBOSE-5-PHOSPHATE (linear form) | ||
Canonical SMILES: O[C@H](COP(O)(O)=O)[C@@H](O)[C@@H](O)C=O | ||
Standard InChI: InChI=1S/C5H11O8P/c6-1-3(7)5(9)4(8)2-13-14(10,11)12/h1,3-5,7-9H,2H2,(H2,10,11,12)/t3-,4+,5-/m0/s1 | ||
HET Code: R5P | PubChem: 77982 | |
DrugBank: DB02053 | ChEMBL: CHEMBL1235597 | |
Molecular Formula: C5H11O8P | Mol. Weight: 230.01915 | logP: -2.6227 |
HBD: 5 | HBA: 6 | |
#Rotatable Bonds: 6 | TPSA: 144.52 |
Covalent Mechanism |
Reaction Name | Residue | Chain ID | SASA | pKa | Warhead Name | Warhead Structure |
Imine Condensation | LYS 84 | A | 13.78 | 9.89 | Ketone |
Binding Affinity |
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