PDB Entry (6vgy)
PDB ID: 6vgy Resolution: 2.05 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32747425 DOI: 10.1126/scitranslmed.abc5332
Protein
Protein Name: 2'-O-methyltransferase
Uniprot ID/ACC: T2B9U0 (T2B9U0_MERS) Organism: Middle East respiratory syndrome-related coronavirus (MERS-CoV)
Gene Symbol: - Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   4-ethylcyclohexyl N-[(1S)-3-methyl-1-{[(2S)-1-oxo-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl]carbamoyl}butyl]carbamate
Canonical SMILES:   CC[C@H]1CC[C@H](CC1)OC(=O)N[C@@H](CC(C)C)C(=O)N[C@H](C=O)C[C@@H]2CCNC2=O
Standard InChI:   InChI=1S/C22H37N3O5/c1-4-15-5-7-18(8-6-15)30-22(29)25-19(11-14(2)3)21(28)24-17(13-26)12-16-9-10-23-20(16)27/h13-19H,4-12H2,1-3H3,(H,23,27)(H,24,28)(H,25,29)/t15-,16-,17-,18+,19-/m0/s1
HET Code:   QZJ PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C22H37N3O5 Mol. Weight:   423.27332 logP:   2.306
HBD:   3 HBA:   5
#Rotatable Bonds:   10 TPSA:   113.6
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Hemi(thio)acetalization CYS 148 A 21.3 14.4 Aldehyde
Binding Affinity
-