PDB Entry (6vh1)
PDB ID: 6vh1 Resolution: 2.3 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32747425 DOI: 10.1126/scitranslmed.abc5332
Protein
Protein Name: 2'-O-methyltransferase
Uniprot ID/ACC: T2B9U0 (T2B9U0_MERS) Organism: Middle East respiratory syndrome-related coronavirus (MERS-CoV)
Gene Symbol: - Gene ID: -
Protein Class: HYDROLASE
Ligand
Ligand Name:   4,4-difluorocyclohexyl N-[(1S)-3-methyl-1-{[(2S)-1-oxo-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl]carbamoyl}butyl]carbamate
Canonical SMILES:   FC1(F)CCC(CC1)OC(=O)N[C@@H](CC(C)C)C(=O)N[C@H](C=O)C[C@@H]2CCNC2=O
Standard InChI:   InChI=1S/C20H31F2N3O5/c1-12(2)9-16(25-19(29)30-15-3-6-20(21,22)7-4-15)18(28)24-14(11-26)10-13-5-8-23-17(13)27/h11-16H,3-10H2,1-2H3,(H,23,27)(H,24,28)(H,25,29)/t13-,14-,16-/m0/s1
HET Code:   QZ7 PubChem:   -
DrugBank:   - ChEMBL:   -
Molecular Formula:   C20H31F2N3O5 Mol. Weight:   431.22318 logP:   1.9151
HBD:   3 HBA:   5
#Rotatable Bonds:   9 TPSA:   113.6
Covalent Mechanism
Reaction Name Residue Chain ID SASA pKa Warhead Name Warhead Structure
Hemi(thio)acetalization CYS 148 A 21.55 14.45 Aldehyde
Binding Affinity
-